Research Output

Research Output

Publications

No. Title Published Journal Author First or corresponding author’s affiliation Date of publication
1 Comparing Bayesian-Based Reconstruction Strategies in Topology-Based Pathway Enrichment Analysis Biomolecules Yajunzi Wang, Jing Li, Daiyun Huang, Yang Hao, Bo Li, Kai Wang, Boya Chen, Ting Li and Xin Liu Xi’an Jiaotong-Liverpool University 2022-08-08
2 . Geographical distribution of trace elements (selenium, zinc, iron, copper) and case fatality rate of COVID-19: A national analysis across conterminous USA. Environmental Geochemistry and Health Ying Chen, Zheng Feei Ma, Dahai Yu , Zifei Jiang, Bo Wang, Linxi Yuan Xi’an Jiaotong-Liverpool University 2022-02-10
3 Comparative differences in musculoskeletal pain consultation and analgesic prescription for people with dementia: a UK wide matched cohort study. Pain Laurna Bullock, John Bedson, Ying Chen, Carolyn A Chew-Graham, Paul Campbell Keele University 2021-11-11
4 Probing the Intracellular Delivery of Nanoparticles into Hard-to-Transfect Cells ACS NANO Xuan Yang, Xiaowei Wen, Jie Dai, Yanming Chen, Wanchuan Ding, Jun Wang, Xiang Gu, Xuejin Zhang, Jin Chen, Roy L. Sutliff, Steven R. Emory, and Gang Ruan Nanjing University 2022-06-28
5 Src family kinases activity is required for transmitting purinergic P2X7 receptor signaling in cortical spreading depression and neuroinflammation JOURNAL OF HEADACHE AND PAIN Lingdi Nie, Dongqing Ma, John P. Quinn and Minyan Wang Xian Jiaotong Liverpool Univ XJTLU 2021-12
6 TRPA1-Mediated Src Family Kinases Activity Facilitates Cortical Spreading Depression Susceptibility and Trigeminovascular System Sensitization INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES Lingdi Nie, Liwen Jiang, John P. Quinn, Blair. Grubb and Minyan Wang Xi’an Jiaotong-Liverpool University 2021-11
7 m6AmPred: Identifying RNA N6, 2 ‘-O-dimethyladenosine (m(6)A(m)) sites based on sequence-derived information METHODS Jie Jiang, Bowen Song, Kunqi Chen, Zhiliang Lu, Rong Rong, Yu Zhong, Jia Meng Xi’an Jiaotong-Liverpool University 2022-07
8 M6A-Atlas: A comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome Nucleic Acids Research Yujiao Tang, Kunqi Chen, Bowen Song, Jiongming Ma, Xiangyu Wu, Qingru Xu, Zhen Wei, Jionglong Su, Gang Liu, Rong Rong, Zhiliang Lu, Jo˜ao Pedro de Magalh˜aes, Daniel J. Rigden and Jia Meng  Xi’An Jiaotong-Liverpool University 2021
9 Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL Lian Liu, Bowen Song, Jiani Ma, Yi Song, Song-Yao Zhang , Yujiao Tang , Xiangyu Wu, Zhen Wei, Kunqi Chen, Jionglong Su, Rong Rong, Zhiliang Lu, João Pedro de Magalhães, Daniel J. Rigden, Lin Zhang, Shao-Wu Zhang, Yufei Huang, Xiujuan Lei, Hui Liu, Jia Meng Shaanxi Normal University 2020
10 Hepatitis B virus X protein counteracts high mobility group box 1 protein-mediated epigenetic silencing of covalently closed circular DNA PLOS Pathogens Elena S. Kim, Jun Zhou, Hu Zhang, Alexander Marchetti, Maarten van de Klundert, Dawei Cai, Xiaoyang Yu, Bidisha Mitra, Yuanjie Liu, Mu Wang, Ulrike Protzer, Haitao Guo Univ Pittsburgh, UPMC Hillman Canc Ctr, Dept Microbiol & Mol Genet, Canc Virol Program,Sch Med, Pittsburgh, PA 15260 USA 2022-08-12
11 Targeting SOD1 via RNAi with PEGylated graphene oxide nanoparticles in platinum-resistant ovarian cancer Cancer Gene Therapy Attila Szénási, Enakshi Sivasudhan, Hong Du, Peizhuo Zhang, Jie Huang, Zhijun Zhang, Sonia Rocha and Mu Wang Xi’an Jiaotong-Liverpool University 2023
12 Flavonifractor plautii Protects Against Elevated Arterial Stiffness. Circulation Research Circulation Research Shiyun Luo, Yawen Zhao, Shanshan Zhu, Ludi Liu, Ken Cheng, Bingqi Ye, Yueyuan Han , Jiahua Fan , Min Xia Sun Yat-Sen University 2023.01
13 Comprehensive Analysis of the Lysine Succinylome in Fish Oil Treated Prostate Cancer Cells Life Science Alliance Yifan Jiang,  He, Haokai Ye, Qianhan Xu, Xiuyuan Chen, Ying Chen, Jianying Sun,  Sonia Rocha,  Mu Wang Xi’an Jiaotong-Liverpool University 2023.11
14 Global acetylome profiling indicates EPA impedes but OA promotes prostate cancer motility through altered acetylation of PFN1 and FLNA Proteomics Chao He, Xiuyuan Chen, Ying Chen, Jianying Sun, Manting Qi, Sonia Rocha, Mu Wang Xi’an Jiaotong-Liverpool University 2024.03
15 TMT-Based Quantitative Proteomic Profiling of Human Esophageal Cancer Cells Reveals the Potential Mechanism and Potential Therapeutic Targets Associated with Radio-Resistance Proteomics – Clinical Applications Gao, A, He, C, Chen, H, Liu, Q, Chen, Y, Sun, J, Wu, C, Pan, Y, Rocha, S, Wang, M, and Zhou, J Xi’an Jiaotong-Liverpool University 2024.09
16 Translocational attenuation mediated by the PERK-SRP14 axis is a protective mechanism of unfolded protein response Cell Reports Y Liu, Y Gu, Y Chen, X Wang, G Zhou, J Li, M Wang, S Fang, Y Yang China Regional Research Centre 2024.07

Projects

No. Project Funding name Funding body Period
1 A machine learning based method for virtual screening and optimization in multi-target drug discovery Jiangsu Science and Technology Programme Jiangsu Provincial Department of Science and Technology 2020.07-2024.06
2 Clinical Efficacy Observation and Mechanism Study of Stem Cell-Converted Dendrobium officinale in Treating G3b Pre-DKD Suzhou Science and Technology Development Planning Programme Suzhou Science and Technology Bureau 2023.04-2027.04
3 Suzhou AI-Driven New Drug Development Innovation Alliance Suzhou Science and Technology Development Planning Programme Suzhou Science and Technology Bureau 2023.07-2026.06
4 An investigation into the mechanism of cardiac repair using a combination of extracellular vesicles from stem cells and their derived cells The Natural Science Foundation of the Jiangsu Higher Education Institutions of China Jiangsu Education Department 2024.07-2026.07
5 Jiangsu Province Higher Education Key Laboratory of Cell Therapy Nanoformulation (Construction) Provincial Key Lab of Jiangsu DoE Jiangsu Education Department 2024.07-2027.06
6 An investigation into a novel gene therapy strategy using extracellular vesicles to encapsulate adeno-associated viruses, aimed at overcoming interference from pre-existing neutralizing antibodies Jiangsu Science and Technology Programme Jiangsu Provincial Department of Science and Technology 2024.09-2027.08
7 Design of self-assembly peptides by Human-in-the-Loop Jiangsu Science and Technology Programme Jiangsu Provincial Department of Science and Technology 2024.09-2027.08
8 Study on the mechanism of DMGV-induced functional impairment of pancreatic β-cell and early progression of type 2 diabetes National Natural Science Foundation of China (NSFC) National Natural Science Foundation of China 2025.01-2027.12
9 Mechanisms of extracellular vesicles derived from human pluripotent stem cells and their cardiac lineage cells for cardiac repair and enhancement of efficacy National Natural Science Foundation of China (NSFC) National Natural Science Foundation of China 2025.01-2027.12
10 The mechanism of ammonia accumulation promotes liver cancer progression via calcium channel-mTORC2-SREBP1-lipogenesis dependent manner National Natural Science Foundation of China (NSFC) National Natural Science Foundation of China 2025.01-2028.12
No. Project Collaborative companies Period Cooperation methods
1 XJTLU Wisdom Lake Academy of Pharmacy – Wosheng Pharmaceutical Joint Laboratory Suzhou Wosheng Biopharmaceutical Co., Ltd. 4/15/2021- 4/14/2024 Scientific research cooperation
2 AI-based Drug Design and Virtual Screening Suzhou Kintor Pharmaceuticals, INC. 9/30/2021- 8/31/2024 Scientific research cooperation
3 The Pharmacokinetics Research of using EPA in CDX (Cell-Derived Xenografts) Mouse Model Jiangsu Yue-Kang Bio-Tech Co., Ltd. 1/10/2022- 1/10/2023 Scientific research cooperation
4 XJTLU Wisdom Lake Academy of Pharmacy – Beaver Biological Joint Science Laboratory Suzhou Beaver Biomedical Engineering Co., Ltd. 2/25/2022- 2/25/2025 Scientific research cooperation
5 siRNA project co-development cooperation agreement Suzhou Junmeng Biopharm Co., LTD. 8/5/2022 – 8/5/2025 Scientific research cooperation
6 Discovery of biomarkers of combined anti-cancer therapy NeoLogics Bioscience Co., Ltd 11/01/2022-10/31/2025 Scientific research cooperation
7 The bioactivity research of native flavonoids from Lithocarpus litseifolius (Hance) Chun project co-development cooperation agreement Liangtian biomedicine Technology Jiangsu Co., LTD. 3/15/2023-3/1/2028 Scientific research cooperation
8 Development of nanomaterials-enabled technology for capture and analysis of biological signals Beijing Rui-Tu Technology Co., LTD 3/10/2023-3/9/2025 Scientific research cooperation
9 Development of a quantitative biomarker assay for early diagnosis of GDM based on biological mass spectrometry The Fifth People’s Hospital of Shanghai 5/1/2023-5/1/2025 Technology Development
10 Developing a Probabilistic Network and Machine Learning-Based Approach for Cancer Molecular Mechanism Study and Target Identification Sano Medical Laboratories, Inc. 9/1/2023-8/31/2026 Scientific research cooperation
11 Safe and green anti-bacterial formulations innovation project co-development cooperation agreement Suzhou Memen Biotechnology Ltd. 6/20/2023-6/20/2028 Scientific research cooperation

Patents

No. Patent name Patent type Date of patent authorization Patent holder
1 NanoBRET receptor binding drug screening system based on Cy5 labeled ligand Invention 2020-12-15 Xi’an Jiaotong-Liverpool University
2 3D co-culture model of fibroblasts and cancer cells as well as preparation method and application of model Invention 2020-06-24 Xi’an Jiaotong-Liverpool University
3 Image classification method and model, storage medium and electronic equipment Invention 2020-05-09 Xi’an Jiaotong-Liverpool University,Sano Medical Laboratories, Inc